Package index • ADS8192

Example Data

Load an example simulated SummarizedExperiment object

example_se: Example SummarizedExperiment for testing

Data Handling

Manipulate SummarizedExperiment objects

top_variable_features(): Select top variable features
make_toast(): Make toast with any bread you want

PCA Analysis

Run and analyze PCA

run_pca(): Run PCA on a SummarizedExperiment
pca_variance_explained(): Get variance explained by each PC

Visualization

Create plots

plot_pca(): Create a PCA scatter plot
plot_variance_explained(): Plot variance explained by principal components

Export

Save results to files

save_pca_results(): Save PCA results to files

Interactive App

Shiny web application

run_app(): Run the PCA Explorer Shiny Application